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…andling - Remove redundant CLI options from command functions, centralizing configuration via Runtime settings. - Add `Runtime.set_value` method to allow programmatic setting of configuration values. - Update README examples to reflect corrected command usage. - Adjust test cases to align with the new configuration approach and command signatures. - Reorder CLI arguments in integration tests for consistency and correctness.
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refactor: Simplify CLI command signatures and improve configuration handling
Runtime.set_valuemethod to allow programmatic setting of configuration values.