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Add minipolish to dockerfile #35

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Merged
rrwick merged 2 commits into from
Jul 7, 2025
Merged

Add minipolish to dockerfile #35

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b7db496
add minipolish
ppenev-eligo Jul 4, 2025
0c2fa56
Update Dockerfile
rrwick Jul 7, 2025
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2 changes: 1 addition & 1 deletion pipelines/Dockerfile_by_Ryan_Wick/Dockerfile
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Expand Up @@ -2,7 +2,7 @@ FROM mambaorg/micromamba:latest

# Create an "autocycler" environment with long-read assemblers.
RUN micromamba create -y -n autocycler python=3.12 -c conda-forge -c bioconda curl && \
for tool in canu flye lja metamdbg miniasm minimap2 minipolish3 necat nextdenovo nextpolish racon raven-assembler wtdbg; do \
for tool in canu flye lja metamdbg miniasm minimap2 minipolish necat nextdenovo nextpolish racon raven-assembler wtdbg; do \
if micromamba install -y -n autocycler -c conda-forge -c bioconda "$tool"; then \
printf " $tool" >> /tmp/installed_tools.txt; \
else \
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