Discussions

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  Is CellRank 2 appropriate for public PBMC (steady/near-steady) datasets?

  lilyzhou222 asked Sep 22, 2025 in Q&A · Unanswered

  

  

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  ValueError: The subspace of Q derived by shifting a non-constant first (Schur)vector

  elgra asked Nov 7, 2024 in Method/Algorithm · Unanswered

  

  

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  scvelo projections after velocity kernel and compute transition matrix look different

  josegarciamanteiga asked Aug 26, 2024 in Q&A · Closed · Unanswered

  

  

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  cr.pl.heatmap and scaling

  craniolab started Jul 15, 2024 in General

  

  

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  Reprograming Data and CellRank

  AP-596 asked Mar 25, 2024 in Biological applications · Closed · Unanswered

  

  

  

  

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  Applying CellRank to multiple samples (with possible batch effects)

  YitengDang asked Nov 20, 2023 in Biological applications · Unanswered

  

  

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  CellRank2 release date?

  YitengDang started Nov 7, 2022 in General · Closed

  

  

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  Can't plot when define terminal_states()

  alexandre-jf-fernandes asked Jul 17, 2023 in Method/Algorithm · Closed · Unanswered

  

  

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  TypeError: Fatal model failure ``.

  alexandre-jf-fernandes asked Jun 28, 2023 in Method/Algorithm · Closed · Unanswered

  

  

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  CellRank v scVelo

  GerardoZA asked Nov 7, 2022 in Q&A · Unanswered

  

  

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  Question about data interpretation

  sneddonucsf asked Jun 10, 2022 in Biological applications · Answered

  

  

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  Question about absorption probabilities in a dataset with one terminal state

  natallah asked Apr 26, 2022 in Q&A · Unanswered

  

  

  

  

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  Generating anndata from Cell Ranger output on Multiome dataset

  sylestiel asked Feb 25, 2022 in Q&A · Unanswered

  

  

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  Stuck at the start

  RoebideBruijn asked Aug 19, 2021 in Q&A · Unanswered

  

  

  

  

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  Is it possible to set the initial state manually?

  hyjforesight asked Dec 3, 2021 in Q&A · Answered

  

  

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  Is it possible to transfer kernels and estimators across datasets?

  dawe started Nov 15, 2021 in General

  

  

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  Did I understand CytoTrace kernel correct?

  dawe started Oct 19, 2021 in General

  

  

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  Modes for transition matrix calculation.

  EmilyMiddendorp asked Sep 29, 2021 in Method/Algorithm · Unanswered

  

  

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  Branching structure

  WeilerP asked Jul 6, 2021 in Method/Algorithm · Unanswered

  

  

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  Plotting of coarse grained transition matrix

  WeilerP started Aug 17, 2021 in Ideas

  

  

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  Results

  pabloatria18 asked Jun 11, 2021 in Q&A · Answered

  

  

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  Cellrank on partially differentiated cells dataset

  castaway1990 asked Mar 1, 2021 in Method/Algorithm · Answered

  

  

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  Welcome to CellRank Discussions!

  Marius1311 started Dec 9, 2020 in General

  

  

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  Accelerating GPCCA

  Marius1311 asked Jun 5, 2020 in Method/Algorithm · Unanswered

  

  

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