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Slurm local from Jiadong Zhou #130

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ef0ef7a
move codes in a new repo
Jun 9, 2025
c71c6df
remove .idea from git
Jun 9, 2025
712085e
change version, sync with upstream
Jun 9, 2025
f2175d4
PortManager should be replaced or cooperate with ssh
Jun 9, 2025
075a0c9
slurm in docker driver 1.0 done
Jul 22, 2025
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4 changes: 2 additions & 2 deletions .gitignore
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@@ -1,5 +1,5 @@
target/*
.idea/*
target/
.idea/
*.png
*.pgf
*.db
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182 changes: 99 additions & 83 deletions pom.xml
100644 → 100755
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Expand Up @@ -6,7 +6,7 @@

<groupId>org.texttechnologylab</groupId>
<artifactId>DockerUnifiedUIMAInterface</artifactId>
<version>1.5.0</version>
<version>1.4.6</version>

<description>Automatic analysis of large text corpora is a complex task. This complexity particularly concerns the question of time efficiency. Furthermore, efficient, flexible, and extensible textanalysis requires the continuous integration of every new text analysis tools. Since there are currently, in the area of NLP and especially in the application context of UIMA, only very few to no adequate frameworks for these purposes, which are not simultaneously outdated or can no longer be used for security reasons, this work will present a new approach to fill this gap. To this end, we present Docker Unified UIMA Interface (DUUI), a scalable, flexible, lightweight, and featurerich framework for automated and distributed analysis of text corpora that leverages experience in Big Data analytics and virtualization with Docker.</description>

Expand Down Expand Up @@ -77,7 +77,7 @@
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<maven.compiler.source>21</maven.compiler.source>
<maven.compiler.target>21</maven.compiler.target>
<typesystem.version>3.0.8</typesystem.version>
<typesystem.version>3.0.7</typesystem.version>
<utilities.version>3.0.0</utilities.version>
<uima.version>3.5.0</uima.version>
<dkpro.core.version>2.4.0</dkpro.core.version>
Expand Down Expand Up @@ -141,49 +141,49 @@
<commitIdGenerationMode>full</commitIdGenerationMode>
</configuration>
</plugin>
<!-- <plugin>-->
<!-- &lt;!&ndash;generate types dynamically &ndash;&gt;-->
<!-- <groupId>org.apache.uima</groupId>-->
<!-- <artifactId>jcasgen-maven-plugin</artifactId>-->
<!-- <version>3.5.0</version>-->
<!-- <configuration>-->
<!-- <limitToProject>true</limitToProject>-->
<!-- <typeSystemIncludes>-->
<!-- <include>src/main/resources/org/texttechnologylab/types/*</include>-->
<!-- &lt;!&ndash; <include>src/main/resources/org/texttechnologylab/types/reproducibleAnnotations.xml</include>&ndash;&gt;-->
<!-- </typeSystemIncludes>-->
<!-- </configuration>-->
<!-- &lt;!&ndash; <executions>&ndash;&gt;-->
<!-- &lt;!&ndash; <execution>&ndash;&gt;-->
<!-- &lt;!&ndash; &lt;!&ndash;call it in the generate-source phase &ndash;&gt;&ndash;&gt;-->
<!-- &lt;!&ndash; <phase>generate-sources</phase>&ndash;&gt;-->
<!-- &lt;!&ndash; <goals>&ndash;&gt;-->
<!-- &lt;!&ndash; <goal>generate</goal>&ndash;&gt;-->
<!-- &lt;!&ndash; </goals>&ndash;&gt;-->
<!-- &lt;!&ndash; </execution>&ndash;&gt;-->
<!-- &lt;!&ndash; </executions>&ndash;&gt;-->
<!-- </plugin>-->
<!-- <plugin>-->
<!-- <groupId>org.codehaus.mojo</groupId>-->
<!-- <artifactId>build-helper-maven-plugin</artifactId>-->
<!-- <version>1.10</version>-->
<!-- <executions>-->
<!-- <execution>-->
<!-- <id>addToSourceFolder</id>-->
<!-- <goals>-->
<!-- &lt;!&ndash;add the generated sources &ndash;&gt;-->
<!-- <goal>add-source</goal>-->
<!-- </goals>-->
<!-- <phase>process-sources</phase>-->
<!-- <configuration>-->
<!-- <sources>-->
<!-- &lt;!&ndash;default path to generated sources &ndash;&gt;-->
<!-- <source>${project.build.directory}/generated-sources/jcasgen</source>-->
<!-- </sources>-->
<!-- </configuration>-->
<!-- </execution>-->
<!-- </executions>-->
<!-- </plugin>-->
<!-- <plugin>-->
<!-- &lt;!&ndash;generate types dynamically &ndash;&gt;-->
<!-- <groupId>org.apache.uima</groupId>-->
<!-- <artifactId>jcasgen-maven-plugin</artifactId>-->
<!-- <version>3.5.0</version>-->
<!-- <configuration>-->
<!-- <limitToProject>true</limitToProject>-->
<!-- <typeSystemIncludes>-->
<!-- <include>src/main/resources/org/texttechnologylab/types/*</include>-->
<!-- &lt;!&ndash; <include>src/main/resources/org/texttechnologylab/types/reproducibleAnnotations.xml</include>&ndash;&gt;-->
<!-- </typeSystemIncludes>-->
<!-- </configuration>-->
<!-- &lt;!&ndash; <executions>&ndash;&gt;-->
<!-- &lt;!&ndash; <execution>&ndash;&gt;-->
<!-- &lt;!&ndash; &lt;!&ndash;call it in the generate-source phase &ndash;&gt;&ndash;&gt;-->
<!-- &lt;!&ndash; <phase>generate-sources</phase>&ndash;&gt;-->
<!-- &lt;!&ndash; <goals>&ndash;&gt;-->
<!-- &lt;!&ndash; <goal>generate</goal>&ndash;&gt;-->
<!-- &lt;!&ndash; </goals>&ndash;&gt;-->
<!-- &lt;!&ndash; </execution>&ndash;&gt;-->
<!-- &lt;!&ndash; </executions>&ndash;&gt;-->
<!-- </plugin>-->
<!-- <plugin>-->
<!-- <groupId>org.codehaus.mojo</groupId>-->
<!-- <artifactId>build-helper-maven-plugin</artifactId>-->
<!-- <version>1.10</version>-->
<!-- <executions>-->
<!-- <execution>-->
<!-- <id>addToSourceFolder</id>-->
<!-- <goals>-->
<!-- &lt;!&ndash;add the generated sources &ndash;&gt;-->
<!-- <goal>add-source</goal>-->
<!-- </goals>-->
<!-- <phase>process-sources</phase>-->
<!-- <configuration>-->
<!-- <sources>-->
<!-- &lt;!&ndash;default path to generated sources &ndash;&gt;-->
<!-- <source>${project.build.directory}/generated-sources/jcasgen</source>-->
<!-- </sources>-->
<!-- </configuration>-->
<!-- </execution>-->
<!-- </executions>-->
<!-- </plugin>-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
Expand Down Expand Up @@ -259,12 +259,12 @@
<version>${uima.version}</version>
</dependency>

<!-- &lt;!&ndash; https://mvnrepository.com/artifact/org.apache.httpcomponents.client5/httpclient5 &ndash;&gt;-->
<!-- <dependency>-->
<!-- <groupId>org.apache.httpcomponents.client5</groupId>-->
<!-- <artifactId>httpclient5</artifactId>-->
<!-- <version>5.3.1</version>-->
<!-- </dependency>-->
<!-- &lt;!&ndash; https://mvnrepository.com/artifact/org.apache.httpcomponents.client5/httpclient5 &ndash;&gt;-->
<dependency>
<groupId>org.apache.httpcomponents.client5</groupId>
<artifactId>httpclient5</artifactId>
<version>5.3.1</version>
</dependency>


<!-- https://mvnrepository.com/artifact/javax.ws.rs/javax.ws.rs-api -->
Expand All @@ -290,17 +290,17 @@


<!-- https://mvnrepository.com/artifact/com.google.oauth-client/google-oauth-client-java6 -->
<!-- <dependency>-->
<!-- <groupId>com.google.oauth-client</groupId>-->
<!-- <artifactId>google-oauth-client-java6</artifactId>-->
<!-- <version>1.23.0</version>-->
<!-- </dependency>-->
<!-- &lt;!&ndash; https://mvnrepository.com/artifact/com.google.oauth-client/google-oauth-client-jetty &ndash;&gt;-->
<!-- <dependency>-->
<!-- <groupId>com.google.oauth-client</groupId>-->
<!-- <artifactId>google-oauth-client-jetty</artifactId>-->
<!-- <version>1.23.0</version>-->
<!-- </dependency>-->
<!-- <dependency>-->
<!-- <groupId>com.google.oauth-client</groupId>-->
<!-- <artifactId>google-oauth-client-java6</artifactId>-->
<!-- <version>1.23.0</version>-->
<!-- </dependency>-->
<!-- &lt;!&ndash; https://mvnrepository.com/artifact/com.google.oauth-client/google-oauth-client-jetty &ndash;&gt;-->
<!-- <dependency>-->
<!-- <groupId>com.google.oauth-client</groupId>-->
<!-- <artifactId>google-oauth-client-jetty</artifactId>-->
<!-- <version>1.23.0</version>-->
<!-- </dependency>-->

<!-- https://mvnrepository.com/artifact/org.aarboard.nextcloud/nextcloud-api -->
<dependency>
Expand Down Expand Up @@ -371,7 +371,7 @@
<dependency>
<groupId>com.influxdb</groupId>
<artifactId>influxdb-client-java</artifactId>
<!-- <version>5.0.0</version>-->
<!-- <version>5.0.0</version>-->
<version>6.9.0</version>
</dependency>

Expand Down Expand Up @@ -484,25 +484,25 @@
<scope>compile</scope>
</dependency>

<!-- <dependency>-->
<!-- <groupId>com.github.texttechnologylab.textimager-uima</groupId>-->
<!-- <artifactId>textimager-uima-io</artifactId>-->
<!-- <version>b10db8275163d19d63b9512cc20ca5872e52499b</version>-->
<!-- <exclusions>-->
<!-- <exclusion>-->
<!-- <groupId>com.github.texttechnologylab</groupId>-->
<!-- <artifactId>UIMATypeSystem</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>org.dkpro.core</groupId>-->
<!-- <artifactId>*</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>de.tudarmstadt.ukp.dkpro.core</groupId>-->
<!-- <artifactId>*</artifactId>-->
<!-- </exclusion>-->
<!-- </exclusions>-->
<!-- </dependency>-->
<!-- <dependency>-->
<!-- <groupId>com.github.texttechnologylab.textimager-uima</groupId>-->
<!-- <artifactId>textimager-uima-io</artifactId>-->
<!-- <version>b10db8275163d19d63b9512cc20ca5872e52499b</version>-->
<!-- <exclusions>-->
<!-- <exclusion>-->
<!-- <groupId>com.github.texttechnologylab</groupId>-->
<!-- <artifactId>UIMATypeSystem</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>org.dkpro.core</groupId>-->
<!-- <artifactId>*</artifactId>-->
<!-- </exclusion>-->
<!-- <exclusion>-->
<!-- <groupId>de.tudarmstadt.ukp.dkpro.core</groupId>-->
<!-- <artifactId>*</artifactId>-->
<!-- </exclusion>-->
<!-- </exclusions>-->
<!-- </dependency>-->

<!-- Givara Ebo https://mvnrepository.com/artifact/io.socket/socket.io-client -->
<dependency>
Expand Down Expand Up @@ -535,7 +535,7 @@
<version>8.5.6</version>
</dependency>

<dependency>
<dependency>
<groupId>io.fabric8</groupId>
<artifactId>kubernetes-client</artifactId>
<version>6.8.0</version> <!-- Use the appropriate version here -->
Expand Down Expand Up @@ -641,6 +641,22 @@
<artifactId>jsoup</artifactId>
<version>1.17.2</version>
</dependency>
<dependency>
<groupId>com.github.docker-java</groupId>
<artifactId>docker-java-transport-httpclient5</artifactId>
<version>3.5.0</version>
</dependency>
<dependency>
<groupId>org.assertj</groupId>
<artifactId>assertj-core</artifactId>
<version>3.24.2</version>
</dependency>
<dependency>
<groupId>org.testng</groupId>
<artifactId>testng</artifactId>
<version>RELEASE</version>
<scope>test</scope>
</dependency>

</dependencies>

Expand Down
6 changes: 5 additions & 1 deletion src/main/java/org/texttechnologylab/DockerUnifiedUIMAInterface/DUUIComposer.java
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Expand Up @@ -829,6 +829,10 @@ public DUUIComposer() throws URISyntaxException {
addEvent(DUUIEvent.Sender.COMPOSER, "Shutdown Hook finished.");
} catch (UnknownHostException e) {
e.printStackTrace();
} catch (IOException e) {
throw new RuntimeException(e);
} catch (InterruptedException e) {
throw new RuntimeException(e);
}
});

Expand Down Expand Up @@ -1932,7 +1936,7 @@ public int getWorkerCount() {
* Shuts down the DUUI controller by signaling every worker and stopping all components.
* @throws UnknownHostException
*/
public void shutdown() throws UnknownHostException {
public void shutdown() throws IOException, InterruptedException {
if (isService) {
addEvent(
DUUIEvent.Sender.COMPOSER,
Expand Down
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