v0.5.0

What's Changed

• udpate ott-jax by @MUCDK in #839

Full Changelog: v0.4.3...v0.5.0

jax update

update jax to >=0.6.1, and make neural dependencies non-optional for a quick fix. In future times, neural part will be moved to a different repository.

v0.4.2

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #794
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #807
• fix value error in align by @ArinaDanilina in #809
• Align method assignment fix by @selmanozleyen in #814

Full Changelog: v0.4.1...v0.4.2

v0.4.0

What's Changed

• (feat): Linear GENOT by @ilan-gold in #662
• set defaults for lr sinkhorn by @MUCDK in #739
• Deprecation of Python 3.9 by @selmanozleyen in #744
• add pancreas dataset by @MUCDK in #741
• update check for categorical dtype by @ArinaDanilina in #749
• Add link to pancreas dataset by @LeonStadelmann in #750
• Fix cell_transition bug by @selmanozleyen in #751
• Fix sankey threshold by @LeonStadelmann in #754
• FutureWarning fixes by @ArinaDanilina in #757
• update pancreas_multiome by @MUCDK in #755
• Refactor/remove protocol classes by @selmanozleyen in #766
• Refactor/handle solve args and update to OTT-JAX 0.5.0 by @selmanozleyen in #748

New Contributors

• @ilan-gold made their first contribution in #662
• @LeonStadelmann made their first contribution in #750

Full Changelog: v0.3.5...v0.4.0

v0.3.5

This release is done to create a DOI on zenodo.