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Reproducing simulation workflow

Status: Open.

#174 In tjiangHIT/cuteSV;

· FrancescaLonghin opened on Oct 17, 2025

Regarding the Evaluation of Simulated Data

Status: Open.

#173 In tjiangHIT/cuteSV;

· YihangLin123 opened on Oct 13, 2025

Multiple overlapping homozygous calls

Status: Open.

#172 In tjiangHIT/cuteSV;

· ljohansson opened on Sep 26, 2025

Call large indel with small genomes

Status: Open.

#170 In tjiangHIT/cuteSV;

· ChenddatHKU opened on Aug 7, 2025

Parameter suggestions for CuteSV to detect transposable elements from ONT data

Status: Open.

#169 In tjiangHIT/cuteSV;

· amarkez opened on Aug 6, 2025

Unable to detect long deletions in BAM file using cuteSV / cuteFC

Status: Open.

#168 In tjiangHIT/cuteSV;

· linawang199210 opened on Jul 17, 2025

none of the SVs detected are visible or seem to exist when I check in IGV​​

Status: Open.

#167 In tjiangHIT/cuteSV;

· WLU-SVG opened on Jun 19, 2025

Software Compatibility and Parameter Selection

Status: Open.

#165 In tjiangHIT/cuteSV;

· huayaozhang123 opened on Jun 11, 2025

Low SV Call Output from CuteSV

Status: Open.

#163 In tjiangHIT/cuteSV;

· bioteksampath opened on Apr 24, 2025

Missing genotype for merged genotype calling.

Status: Open.

#162 In tjiangHIT/cuteSV;

· mnshgl0110 opened on Apr 15, 2025

Unable to accurately extract the insertion DNA sequence in INS.sigs when the reads are supplementary alignment reads.

Status: Open.

#160 In tjiangHIT/cuteSV;

· epi-lhe opened on Mar 4, 2025

Do not output the nucleotide sequence of SV to the vcf file.

Status: Open.

#159 In tjiangHIT/cuteSV;

· star-lamp opened on Dec 13, 2024