Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

Bioinfo scripts for the analyses described in EXPERIMENTAL PROCEDURES section of "Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve" manuscript

RNA-seq Quality Control and Preprocessing Tool - Interactive Shiny application for comprehensive RNA sequencing data validation, quality assessment, filtering, and normalization. Developed at Harvard Medical School Department of Immunology for global research use. Topics

Analysis of Bulk RNA Sequencing of Colon(LMMP) and DRG tissues of IBS mice.

Code used for the deconvoluting right atrium and sinus node bulk RNA-Seq into scRNA-Seq

bisque-deconv is a fully containerized and reproducible workflow for cell-type deconvolution of bulk RNA-seq data using BisqueRNA. It provides quality control, signature matrix generation, tumor microenvironment (TME) interpretation tools, and ready-to-publish reports.

Tabula Muris Senis Transcriptomic Secretome Database Generation + White Adipose Depot Analysis

Bulk-RNA seq workflow