Python Package for the downstream analysis of mass-spectrometry-based proteomics data
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Nov 21, 2025 - Jupyter Notebook
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dia-nn
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This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.
fasta proteomics dia dda metabolomics mass-spectrometry contamination mitochondrion neurodegeneration dia-nn lysosome keratin spectronaut trypsin streptavidin bioanalytical-chemistry protein-contaminant
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Nov 24, 2024
Nextflow workflow for performing DIA proteomics
workflow bioinformatics nextflow proteomics dia encyclopedia qc skyline nextflow-pipeline dia-nn proteowizard
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Apr 14, 2026 - Nextflow
R package and Shiny app for the dowstream analysis of quantitative proteomic data
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Apr 7, 2026 - R
DIA LC-MS data analysis tool for AMR detection
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Feb 15, 2023 - R
ZIGGY: The Proteomics Rockstar. Mass spec QC and visualization for Bruker timsTOF and Thermo Orbitrap. Sneaky Peaky ion comparison, MIA mobility library, experimental spectra, Landscape Viewer, auto instrument detection. Built on STAN by Brett Phinney. Proteomics that sparks joy.
proteomics mass-spectrometry bruker ziggy ion-mobility mia timstof dia-nn orbitrap 4d-proteomics sneaky-peaky experimental-spectra proteomics-dashboard instrument-qc
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Apr 17, 2026 - JavaScript
A Nextflow pipeline for analyzing DIA immunopeptidomics data using DIA-NN
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Mar 19, 2026 - Nextflow
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