CMSC737 - Assembly Model Testing
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Mar 12, 2014 - Python
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genomic-analysis
Here are 6 public repositories matching this topic...
Fast and efficient conversion of Nanopore modBAM from guppy basecaller to BED files for differential methylation and machine learning predictions
bam-files bioinformatics nanopore pipeline genomics sequencing methylation epigenetics oxford-nanopore cpg basecaller bed-format long-read-sequencing genomic-analysis methylation-analysis guppy oxford-nanopore-data oxford-nanopore-sequencing epigenetics-data modbam
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Oct 22, 2025 - Shell
Analyzing the genomic and metagenomic features of SGB748 MAGs from oral samples to uncover their role in health and peri-implant diseases through patient metadata integration.
shell bash bioinformatics microbial-genomics metagenomic-analysis phylogenetic-analysis roary prokka genomic-analysis checkm oral-microbiome metadata-integration dental-plaque peri-implantitis sgb-mags phylophlan fast-tree
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Jul 13, 2025 - Jupyter Notebook
This project was conducted as part of the HIDS-7003-01 Final Project to explore molecular and immune-related changes in Bladder Cancer using genomic data.
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Aug 19, 2025 - HTML
Data associated with Ferrante et al. 2021 - Conservation Genetics
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Apr 13, 2021 - R
A comparative genomic analysis carried out with genomic tool kits such as SAMtools , BCFtools , MAFFT as well as phylogeny softwares such as iTOL.
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Feb 23, 2021
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