Segment Source Distribution

A unified framework for example-based texture synthesis, developed alongside my master's thesis.

Package to make analysis of transmission electron microscopy images simple.

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and other sciences.

Teaching materials for Boston Bioimage Analysis Course (BoBiAC).

Rolling release code for the nTracer ImageJ/Fiji plugin, as published in: Roossien DH, et. al, Bioinformatics 2019.

Example of how to use MATLAB Experiment Manager to manipulate very large images in the context of computational pathology (CPATH).

Segmentation of nuclei, chloroplasts or both, and remaining regions. Area, mean intensity, histograms export.

Automated analysis of brain tissue images using Python (GFAP, SOX9, NeuN, Hoechst)

Coursework in Image Analysis and Computer Vision - DD2423 @ KTH Royal Institute of Technology

Package for analysis of sensor plant data, based on microscopic images

Automatic detection of buildings in satellite images

Code used to generate the figures for the "Neutrophils Actively Swell to Potentiate Migration" paper