phylo42 / sherpas Star 10 Code Issues Pull requests Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences virus recombination subtyping genotyping kmers ancestral-sequences phylo-kmers recombination-detection Updated Sep 3, 2025 C++
genpat-it / cgDist Star 2 Code Issues Pull requests Discussions Ultra-fast SNP/indel-level distance calculator for core genome MLST analysis in bacterial genomics rust bioinformatics genomics phylogenetics epidemiology mlst cgmlst snp-analysis food-safety recombination-detection outbreak-investigation bacterial-genomics Updated Oct 21, 2025 Rust
ouzounis / CoronaARG Star 0 Code Issues Pull requests Ancestral recombination among the Coronaviridae epidemiology genomic-data-analysis coronavirus recombination-detection Updated Aug 19, 2020 HTML