ACEnglish / truvari Star 388 Code Issues Pull requests Discussions Structural variant toolkit for VCFs benchmarking data-science bioinformatics genomics sequencing vcf annotation-tool structural-variation vcf-comparison sv-merging Updated Oct 11, 2025 Python
dellytools / sansa Star 34 Code Issues Pull requests Structural variant VCF annotation, duplicate removal and comparison gene-annotation structural-variation vcf-comparison vcf-filtering delly sv-annotation sv-merging vcf-annotation Updated Oct 14, 2025 C++
Han-Cao / collapse-bubble Star 8 Code Issues Pull requests Pangenome structural variations (SV) merging and overlapping variant merging bioinformatics genomics structural-variation pangenome sv-merging truvari Updated Nov 12, 2025 Python
parklab / EchoSV Star 6 Code Issues Pull requests A novel tool for accurately merging haplotype-based SV calls and comparing SVs across reference genomes cross-reference genotyping sv-merging sv-comparison Updated Oct 9, 2025 Python