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samhornstein
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PeterSu92
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PeterSu92
…n, google batch compute
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Summary
Adapts AMR++ bioinformatics pipeline to run on Verily Workbench with Nextflow orchestration and Google Batch compute.
Key Changes
${task.cpus}instead of hardcoded threadsEnvironments
Technical Details
Fixes Google Batch limitation where machine types don't auto-scale based on CPU/memory requests. Config precedence:
withName>withLabel> default.Requires Nextflow v24, Docker,
wbCLI,gcloud.