workflow-build-index

A workflow for building Virtool reference indexes.

Steps

1. Build index of default isolates using bowtie2-build.
2. Compress FASTA file.
3. Upload FASTA and Bowtie2 index files to server.
4. Finalize the index resource, which allows it to be used in analysis workflows.

Contributing

Unit Tests

Virtual Environment

poetry install
poetry run pytest