2.0.0

This release contains a major new version of the small RNA pipeline. Major changes are as follows:

• Totally new config file setup to make easier to use
• New trimming strategy implemented
• Fixes to issues when the pipeline plots small RNA charts
• sort and targetid now output results by length and first base as well to make downsteam analysis easier
• New optional enrich option in targetid to create lists of GO terms, KEGG pathways and PFams from targets
• Documentation is now web based, availible at: https://vicky-hunt-lab.github.io/HuntLab-smallRNA/latest
• Apptainer and Docker containers now supported as installation methods with included Dockerfile
• Build system migrated from distutils to hatchling for a more modern experience
• Number of other smaller bug fixes and efficency improvements

1.1.0

Update pipeline to run faster

• Threading more reliable and extended to unitas, significantly speeding up
• New deduplication algorithm in sort to improve run times
• Many other bug fixes

1.0.0

Initial Release of HuntLab-smallRNA