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Confusing results comparing QTLs without and with WASP filters

Status: Open.

#127 In bmvdgeijn/WASP;

· plbngl opened on Dec 5, 2025

Optimization: Replace np.apply_along_axis(np.sum, 1, ...) with direct sum(axis=1) for better performance

Status: Open.

#126 In bmvdgeijn/WASP;

· SaFE-APIOpt opened on Apr 18, 2025

Does WASP mapping work with Hi-C / Micro-C data?

Status: Open.

#125 In bmvdgeijn/WASP;

· szarnick opened on Jan 2, 2025

Empty Output Files from find_intersecting_snps.py in WASP ASE Analysis

Status: Open.

#124 In bmvdgeijn/WASP;

· chen-t43 opened on Dec 20, 2024

Does WASP allele-specific mapping work with long-reads as input?

Status: Open.

#123 In bmvdgeijn/WASP;

· dmanahan1 opened on Sep 16, 2024

Changed output from filter_remapped_reads.py

Status: Open.

#122 In bmvdgeijn/WASP;

· kwcurrin opened on Apr 25, 2024

Is it feasible to use population-level SNP instead of individual sample's variant information?

Status: Open.

#121 In bmvdgeijn/WASP;

· zhangjy859 opened on Jan 8, 2024

Error parsing genotype likelihoods

Status: Open.

#120 In bmvdgeijn/WASP;

· aanderson54 opened on Dec 5, 2023

Is WASP suitable for WGBS data?

Status: Open.

#118 In bmvdgeijn/WASP;

· taolincj opened on Mar 4, 2023

VCF to HDF5 Error

Status: Open.

#117 In bmvdgeijn/WASP;

· PaulinaUrbana opened on May 12, 2022

error in rule "get_as_counts" / bam2h5.py

Status: Open.

#116 In bmvdgeijn/WASP;

· azurillandfriend opened on Apr 4, 2022

running snp2h5 in the mapping snakemake

Status: Open.

#115 In bmvdgeijn/WASP;

· azurillandfriend opened on Apr 1, 2022