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make: *** [Makefile:29: src/alignment_cmdline.o] Error 1

Status: Open.

#31 In iqbal-lab/cortex;

· kdyoung100 opened on Jul 25, 2022

Bump up seq_file dependency

Status: Open.

#28 In iqbal-lab/cortex;

· bricoletc opened on Mar 1, 2021

System-wide htslib can fail linkage

Status: Open.

#26 In iqbal-lab/cortex;

· bricoletc opened on May 6, 2020

Cortex not outputting empty VCF when genotyped calls file is empty

Status: Open.

#25 In iqbal-lab/cortex;

· iqbal-lab opened on Apr 7, 2020

Possible precedence issue with control flow operator

Status: Open.

#24 In iqbal-lab/cortex;

· iqbal-lab opened on Dec 16, 2019

make MAXK=31 NUM_COLS=1 cortex_var

Status: Open.

#22 In iqbal-lab/cortex;

· EmilyWesel opened on Jul 25, 2018

Running the run_calls wrapper with different numbers of samples produces different SNPs

Status: Open.

#17 In iqbal-lab/cortex;

· bioinfo11 opened on Sep 24, 2017

In function <code>print_usage': nw_cmdline.c undefined reference to </code>string_buff_strlen'

Status: Open.

#15 In iqbal-lab/cortex;

· tseemann opened on Mar 24, 2016

wrong ref allele given in vcf of calls

Status: Open.

#14 In iqbal-lab/cortex;

· rmcolq opened on Feb 10, 2016

run_indep_wkflow_with_gnu_par hangs after parallel build step before combine

Status: Open.

#12 In iqbal-lab/cortex;

· rmcolq opened on Feb 1, 2016

Fix known bugs in genotyping and look at confidence distribution

Status: Open.

#11 In iqbal-lab/cortex;

· iqbal-lab opened on Nov 17, 2015

missing / / in run_indep_wkflow_with_gnu_par.pl

Status: Open.

#9 In iqbal-lab/cortex;

· hcdenbakker opened on Sep 13, 2015