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Data extraction #329

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bbb5524
Add XML files to gitignore
BreNaidu Feb 9, 2026
2b22cc0
Delete xml_boneset_reader.py
BreNaidu Feb 9, 2026
50b9a87
Merge branch 'main' of https://github.com/oss-slu/DigitalBonesBox
BreNaidu Feb 9, 2026
65d4152
Merge branch 'main' of https://github.com/oss-slu/DigitalBonesBox
BreNaidu Feb 23, 2026
9a8a112
Resolve merge conflict: keep xml_boneset_reader.py and retain functio…
BreNaidu Mar 2, 2026
713b2c6
Merge branch 'main' of https://github.com/oss-slu/DigitalBonesBox
BreNaidu Mar 23, 2026
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5 changes: 4 additions & 1 deletion .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -21,4 +21,7 @@ Thumbs.db

# Cache files
__pycache__/
*.pyc
*.pyc

# XML files
*.xml
2 changes: 2 additions & 0 deletions boneset-api/package-lock.json
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15 changes: 13 additions & 2 deletions data_extraction/Extract_Bone_Descriptions.py
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Original file line number Diff line number Diff line change
@@ -1,9 +1,11 @@
import xml.etree.ElementTree as ET
import json
import os
import argparse
import sys

slides_dir = "ppt/slides"
output_filename = "all_bone_descriptions.json"

def extract_descriptions_from_slide(xml_file): # Extract descriptions from a single slide XML file
try:
tree = ET.parse(xml_file)
Expand Down Expand Up @@ -206,4 +208,13 @@ def process_all_slides(ppt_dir, output_dir):

os.makedirs(args.output_dir, exist_ok=True)
success = process_all_slides(args.ppt_dir, args.output_dir)
sys.exit(0 if success else 1)
sys.exit(0 if success else 1)
with open(output_json_path, 'w') as f:
json.dump(bone_data, f, indent=4)

print(f"Descriptions saved to {output_json_path}")

# Example usage
xml_file = "/Users/joshbudzynski/Downloads/example_folder/ppt/slides/slide3.xml"
output_json = "slide3_Descriptions.json"
parse_slide_xml(xml_file, output_json)
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