fix: Add python 3.13 support

.github/workflows/release.yml

@@ -74,7 +74,7 @@ jobs:
         uses: astral-sh/setup-uv@v5
 
       - name: Install the project
-        run: uv sync --frozen --all-groups --python 3.12
+        run: uv sync --frozen --all-groups --python 3.13
 
       - name: Build Changelog
         id: github_release

.github/workflows/test.yml

@@ -20,7 +20,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: [ "3.10", "3.11", "3.12" ]
+        python-version: [ "3.10", "3.11", "3.12", "3.13" ]
         os: [ "ubuntu-latest", "macos-latest", "windows-latest" ]
 
     runs-on: ${{ matrix.os }}
@@ -58,7 +58,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: [ "3.10", "3.11", "3.12" ]
+        python-version: [ "3.10", "3.11", "3.12", "3.13" ]
         os: [ "ubuntu-latest", "macos-latest", "windows-latest" ]
 
     runs-on: ${{ matrix.os }}

README.md

@@ -100,7 +100,7 @@ pip install --no-deps -e .
 
     Alternatively, using [uv](https://github.com/astral-sh/uv):
     ```shell
-    uv venv -p 3.12 polaris
+    uv venv -p 3.13 polaris
     source .venv/polaris/bin/activate
     uv pip compile pyproject.toml -o requirements.txt --all-extras
     uv pip install -r requirements.txt 

env.yml

@@ -2,7 +2,7 @@ channels:
   - conda-forge
 
 dependencies:
-  - python >=3.10,<3.13
+  - python >=3.10,<3.14
   - pip
   - typer
   - pyyaml
@@ -33,8 +33,8 @@ dependencies:
 
   # Storage
   - zarr >=2,<3
-  - pyarrow <18
-  - numcodecs >=0.13.1,<0.16.0
+  - pyarrow >= 21.0.0
+  - numcodecs <= 0.16.0
 
   # Dev
   - pytest

pyproject.toml

@@ -15,7 +15,7 @@ authors = [
     { name = "Julien St-Laurent", email = "julien.stl@valencelabs.com" },
 ]
 readme = "README.md"
-requires-python = ">=3.10,<3.13"
+requires-python = ">=3.10,<3.14"
 classifiers = [
     "Development Status :: 5 - Production/Stable",
     "Intended Audience :: Developers",
@@ -32,6 +32,8 @@ classifiers = [
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+
 ]
 dependencies = [
     "authlib",
@@ -40,10 +42,10 @@ dependencies = [
     "fastpdb",
     "fsspec[http]",
     "httpx",
-    "numcodecs[msgpack] >=0.13.1, <0.16.0",
+    "numcodecs[msgpack] <= 0.16.0",
     "numpy <3",
     "pandas",
-    "pyarrow < 18",
+    "pyarrow >= 21.0.0",
     "pydantic >=2",
     "pydantic-settings >=2",
     "pyroaring",
@@ -122,7 +124,7 @@ Documentation = "https://polaris-hub.github.io/polaris/"
 include-package-data = true
 
 [tool.setuptools_scm]
-fallback_version = "0.0.0.dev1"
+fallback_version = "0.0.0"
 
 [tool.setuptools.packages.find]
 where = ["."]