Simulate the C. Elegans worm brain in your browser and interact with the worm as it moves around
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Feb 26, 2025 - JavaScript
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connectome
Here are 97 public repositories matching this topic...
Graph theory analysis of brain MRI data
r statistics neuroscience mri graph-theory neuroimaging complex-networks fmri network-analysis connectomics brain-imaging connectome brain-connectivity tractography
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Feb 20, 2024 - R
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
awesome mri neuroimaging imageprocessing bids microstructure diffusion-mri connectome resting-state multimodal
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Mar 20, 2026 - Shell
Python library for analysis of neuroanatomical data.
visualization python blender neuroscience transform segmentation neurons swc volumes skeletons anatomy meshes 3d connectome neuroanatomy nblast flywire neuprint hemibrain morphometric
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Mar 21, 2026 - Python
A dynamic connectome mapping module in python.
python clustering dynamic graphs neuroscience meg eeg connectivity neuroimaging fmri graph-analysis connectome functional-connectivity time-varying fc-states graph-distances
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Jul 24, 2023 - Python
STAGIN: Spatio-Temporal Attention Graph Isomorphism Network
attention neuroimaging fmri connectome explainability neurips gnn graph-neural-network stagin neurips2021
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Jul 16, 2023 - Python
A performant, powerful query framework to search for network motifs
python neo4j graph networkx graph-database connectomics query-language connectome motif-discovery graph-matching motifs subgraph-isomorphism bossdb vf2 aplbrain dotmotif
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Jan 8, 2026 - Python
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
python docker pipelines singularity eeg fmri bids brain connectome parcellation dmri bidsapp bids-apps chuv
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Mar 20, 2026 - HTML
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
image-processing chunk image-segmentation connectome volumetric-data 3d-images convnet-inference composable-operators
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Jun 20, 2025 - Python
A unified framework for skeletonization, morphological analysis, and connectivity analysis.
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Aug 23, 2024 - Julia
A prediction-based extension of network-based statistics.
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Jan 2, 2026 - MATLAB
Please use the new version of LiFE: www.github.com/brain-life/encode
statistics neuroscience mri neuroimaging brain diffusion-network diffusion-mri connectome neuroanatomy
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Sep 29, 2017 - MATLAB
A Hugo theme with backlinks for online communities
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Oct 31, 2023 - CSS
Tools to work with the FlyWire connectome. Fully interoperable with navis.
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Feb 20, 2026 - Python
A multipurpose matlab-based MEG/EEG overlay & network plotter
visualization rendering visualisation neuroscience meg eeg graph-theory neuroimaging volume-rendering raycasting surface magnetoencephalography visualize-data brain-imaging connectome neurophysiology
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Dec 5, 2025 - MATLAB
Fast and memory efficient approach for connectome-wide association studies in R and C++. Uses custom implementation of multivariate distance matrix regression to associate brain and behavior.
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Nov 15, 2020 - R
An Explainable Geometric-Weighted Graph Attention Network (xGW-GAT) for Identifying Functional Networks Associated with Gait Impairment
pytorch classification brain-imaging connectome parkinsons-disease symmetric-positive-definite graph-attention-networks brain-networks graph-neural-networks gat pytorch-geometric ai4health rsfmri gait-impairment
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Dec 5, 2024 - Python
GNN with summarization/grouping layer for speed and interpretability
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Feb 21, 2021 - Python
Embodied Drosophila: 138,639-neuron whole-brain connectome simulation (FlyWire v783) in a biomechanical body (NeuroMechFly v2 / MuJoCo). Vision, olfaction, gustation, flight, and emergent behaviors — all from the real connectome.
robotics gpu neuroscience pytorch computational-neuroscience biomechanics drosophila connectome mujoco lif-neurons spiking-neural-network flywire embodied-ai brain-simulation neuromechfly
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Mar 21, 2026 - Python
Code for implementing the Aggregation-Network diffusion model (AND), as described in the paper: "Combined Model of Aggregation And Network Diffusion Recapitulates Alzheimer’s Regional Tau-PET " by Ashish Raj*, Veronica Tora, Xiao Gao, Hanna Cho, Jae Yong Choi, Young Hoon Ryu, Chul Hyoung Lyoo, Bruno Franchi. *Department of Radiology and Biomedic…
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Dec 2, 2020 - MATLAB
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